PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30024.m001746

Common Name

RCOM_1244860

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 451aa MW: 50679.6 Da PI: 6.8357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30024.m001746	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	459.2	2.6e-140	27	448	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lLl+c ++v++g+le+a+ +L ++s+las +gd+mqR+aayfteALa+r+ + ++++ +al++++ + +see+ ++klf+e++P+lk++++ 30024.m001746 27 LIHLLLTCGNHVAAGSLENAEIALGQISQLASAEGDTMQRIAAYFTEALAHRIIKAWPGVHRALNATKIT--LVSEEILVRKLFFEMFPFLKVGFV 120 689***********************************************************999998..7******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 ++NqaI ea+ege++vHiiD+++ +++QW+aLlqaL++R+egpp+lRiTg+++ +ke l +++++L++ Ae+l++pf+fn+ ++++le+l++e 30024.m001746 121 ITNQAIIEAMEGEKMVHIIDLNAVEPAQWLALLQALSARREGPPHLRITGIHQ----QKEVLDQMAHKLSEEAERLDIPFQFNP-IVSKLENLDIE 211 *************************************************....9**********************.7999*** PP GRAS 193 eLrvkpgEalaVnlvlqlhrll.........................................................desvsleserdevLklv 231 +Lrvk+gEala+++vlqlh++l ++++s+ + d +L+++ 30024.m001746 212 KLRVKTGEALAISSVLQLHSFLasddelrkrspvtlknsngmhlqrvlpanqgtlgellekdmvngyspsshstsssplSSTASV--KMDYFLNTL 305 *********************************************************************987654333333..4699* PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +slsPk++vv+eq+++hn++s++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n+++c gaer+erhe+le+W +rl+ aGF++v 30024.m001746 306 WSLSPKLMVVMEQDSNHNGSSLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIISCDGAERKERHEKLERWIQRLDLAGFGNV 401 ******************************************************************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls+ qa++ll+ ++ dgyr+++e+g++v++W+drpL+s+SaWr 30024.m001746 402 PLSYCGLLQARRLLQGYGCDGYRIKDENGCVVICWQDRPLFSLSAWR 448 ********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.56	1	428	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-138	27	448	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MMSLSPGMGS PYPWLRELKS EERGLYLIHL LLTCGNHVAA GSLENAEIAL GQISQLASAE 60 GDTMQRIAAY FTEALAHRII KAWPGVHRAL NATKITLVSE EILVRKLFFE MFPFLKVGFV 120 ITNQAIIEAM EGEKMVHIID LNAVEPAQWL ALLQALSARR EGPPHLRITG IHQQKEVLDQ 180 MAHKLSEEAE RLDIPFQFNP IVSKLENLDI EKLRVKTGEA LAISSVLQLH SFLASDDELR 240 KRSPVTLKNS NGMHLQRVLP ANQGTLGELL EKDMVNGYSP SSHSTSSSPL SSTASVKMDY 300 FLNTLWSLSP KLMVVMEQDS NHNGSSLMER LLEALYSYAA LFDCLESTVS RTSLERLKVE 360 KMLFGEEIKN IISCDGAERK ERHEKLERWI QRLDLAGFGN VPLSYCGLLQ ARRLLQGYGC 420 DGYRIKDENG CVVICWQDRP LFSLSAWRCK K

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MMSLSPGMGS PYPWLRELKS EERGLYLIHL LLTCGNHVAA GSLENAEIAL GQISQLASAE  60
GDTMQRIAAY FTEALAHRII KAWPGVHRAL NATKITLVSE EILVRKLFFE MFPFLKVGFV  120
ITNQAIIEAM EGEKMVHIID LNAVEPAQWL ALLQALSARR EGPPHLRITG IHQQKEVLDQ  180
MAHKLSEEAE RLDIPFQFNP IVSKLENLDI EKLRVKTGEA LAISSVLQLH SFLASDDELR  240
KRSPVTLKNS NGMHLQRVLP ANQGTLGELL EKDMVNGYSP SSHSTSSSPL SSTASVKMDY  300
FLNTLWSLSP KLMVVMEQDS NHNGSSLMER LLEALYSYAA LFDCLESTVS RTSLERLKVE  360
KMLFGEEIKN IISCDGAERK ERHEKLERWI QRLDLAGFGN VPLSYCGLLQ ARRLLQGYGC  420
DGYRIKDENG CVVICWQDRP LFSLSAWRCK K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-39	27	448	4	375	GRAS family transcription factor containing p
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002516708.2	0.0	PREDICTED: scarecrow-like protein 3
Swissprot	Q9LPR8	0.0	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	B9RSI9	0.0	B9RSI9_RICCO; Transcription factor, putative
STRING	POPTR_0009s05330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2383	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	0.0	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	30024.m001746